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    si:ch211-157b11.12 si:ch211-157b11.12 [ Danio rerio (zebrafish) ]

    Gene ID: 559239, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch211-157b11.12provided by ZNC
    Official Full Name
    si:ch211-157b11.12provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041111-80
    See related
    Ensembl:ENSDARG00000086336 AllianceGenome:ZFIN:ZDB-GENE-041111-80
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    c6h1orf159; im:7139423
    Summary
    Predicted to be located in membrane. Orthologous to human C1orf159 (chromosome 1 open reading frame 159). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See si:ch211-157b11.12 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (40707162..40713199, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (40709626..40715663, complement)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene arginine-glutamic acid dipeptide (RE) repeats b Neighboring gene PPARGC1 and ESRR induced regulator, muscle 1b Neighboring gene RING finger protein 223 Neighboring gene interactor of HORMAD1 1 Neighboring gene kelch repeat and BTB (POZ) domain containing 12 Neighboring gene solute carrier family 26 member 6, like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C1orf159 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001326426.1 → NP_001313355.1  uncharacterized protein C1orf159 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      CR450814, EH538889
      UniProtKB/TrEMBL
      A0A8M1P8K8, A0A8M9QFF2, X1WEP4
      Related
      ENSDARP00000128695.1, ENSDART00000153702.3
      Conserved Domains (1) summary
      pfam14946
      Location:29 → 190
      DUF4501; Domain of unknown function (DUF4501)

    2. NM_001326427.1 → NP_001313356.1  uncharacterized protein C1orf159 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      CR450814, EH538889
      UniProtKB/TrEMBL
      A0A8M1P2M6
      Related
      ENSDARP00000127999.1, ENSDART00000157113.3

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      40707162..40713199 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021476881.2 → XP_021332556.2  uncharacterized protein C1orf159 homolog isoform X2

      Related
      ENSDARP00000127577.1, ENSDART00000154810.2

    2. XM_068221731.1 → XP_068077832.1  uncharacterized protein C1orf159 homolog isoform X3

      UniProtKB/TrEMBL
      A0A8M9QAD6

    3. XM_068221732.1 → XP_068077833.1  uncharacterized protein C1orf159 homolog isoform X4

    4. XM_068221733.1 → XP_068077834.1  uncharacterized protein C1orf159 homolog isoform X4

    5. XM_017356496.3 → XP_017211985.1  uncharacterized protein C1orf159 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8M1P8K8, A0A8M9QFF2, X1WEP4
      Conserved Domains (1) summary
      pfam14946
      Location:29 → 190
      DUF4501; Domain of unknown function (DUF4501)
    Nucleotide Protein Strain
    Heading Accession and Version

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