U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ccdc120b coiled-coil domain containing 120b [ Danio rerio (zebrafish) ]

    Gene ID: 768286, updated on 9-Dec-2024

    Summary

    Official Symbol
    ccdc120bprovided by ZNC
    Official Full Name
    coiled-coil domain containing 120bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-061027-93
    See related
    Ensembl:ENSDARG00000032856 AllianceGenome:ZFIN:ZDB-GENE-061027-93
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    ccdc120; zgc:153457; zk13a21.14; si:dkey-13a21.14
    Summary
    Orthologous to human CCDC120 (coiled-coil domain containing 120). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See ccdc120b in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (25596022..25618583)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (25340783..25380967)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene CXXC finger protein 1b Neighboring gene methyl-CpG binding domain protein 1b Neighboring gene catechol-O-methyltransferase b Neighboring gene glutamate receptor, metabotropic 6b

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 120
    Names
    coiled-coil domain containing 120

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077451.2NP_001070919.2  coiled-coil domain-containing protein 120

      See identical proteins and their annotated locations for NP_001070919.2

      Status: VALIDATED

      Source sequence(s)
      CR933820
      UniProtKB/TrEMBL
      A0A8M1NAB9, F1QA47
      Related
      ENSDARP00000119178.1, ENSDART00000140856.2
      Conserved Domains (1) summary
      pfam11819
      Location:1286
      DUF3338; Domain of unknown function (DUF3338)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      25596022..25618583
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068224223.1XP_068080324.1  coiled-coil domain-containing protein 120 isoform X1

      UniProtKB/TrEMBL
      A0A8M1NAB9, F1QA47
      Related
      ENSDARP00000103494.2, ENSDART00000111961.4

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394822.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      210797..233111
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)