U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    asphd2 aspartate beta-hydroxylase domain containing 2 [ Danio rerio (zebrafish) ]

    Gene ID: 569819, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    asphd2provided by ZNC
    Official Full Name
    aspartate beta-hydroxylase domain containing 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-061103-142
    See related
    Ensembl:ENSDARG00000059629 AllianceGenome:ZFIN:ZDB-GENE-061103-142
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:153516
    Summary
    Predicted to enable 2-oxoglutarate-dependent dioxygenase activity. Predicted to be located in membrane. Orthologous to human ASPHD2 (aspartate beta-hydroxylase domain containing 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See asphd2 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (39965112..39984589, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (39931339..39950937, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene malectin Neighboring gene calcium binding protein 1a Neighboring gene gamma-glutamyltransferase 5a Neighboring gene gamma-glutamyltransferase 1a

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Correlated expression of retrocopies and parental genes in zebrafish. Zhong Z, et al. Mol Genet Genomics, 2016 Apr. PMID 26561303
    2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables 2-oxoglutarate-dependent dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    aspartate beta-hydroxylase domain-containing protein 2
    NP_001073514.1
    XP_005167441.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080045.1 → NP_001073514.1  aspartate beta-hydroxylase domain-containing protein 2

      See identical proteins and their annotated locations for NP_001073514.1

      Status: PROVISIONAL

      Source sequence(s)
      BC125876
      UniProtKB/Swiss-Prot
      A0JMH0
      Related
      ENSDARP00000077501.4, ENSDART00000083066.5
      Conserved Domains (1) summary
      pfam05118
      Location:191 → 352
      Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      39965112..39984589 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005167384.5 → XP_005167441.1  aspartate beta-hydroxylase domain-containing protein 2 isoform X1

      See identical proteins and their annotated locations for XP_005167441.1

      UniProtKB/Swiss-Prot
      A0JMH0
      Conserved Domains (1) summary
      pfam05118
      Location:191 → 352
      Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0JMH0.1 GenPept UniProtKB/Swiss-Prot:A0JMH0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools