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    atp5mc1 ATP synthase membrane subunit c locus 1 [ Danio rerio (zebrafish) ]

    Gene ID: 406301, updated on 2-Nov-2024

    Summary

    Official Symbol
    atp5mc1provided by ZNC
    Official Full Name
    ATP synthase membrane subunit c locus 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1966
    See related
    Ensembl:ENSDARG00000056008 AllianceGenome:ZFIN:ZDB-GENE-040426-1966
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    atp5g1; zgc:73293; zgc:86684; wu:fb13h01; wu:fb14d03
    Summary
    Predicted to enable lipid binding activity and proton transmembrane transporter activity. Predicted to be involved in proton motive force-driven ATP synthesis. Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in mitochondrial membrane. Predicted to be part of proton-transporting ATP synthase complex, coupling factor F(o). Is expressed in several structures, including adaxial cell; liver; musculature system; pericardial region; and pronephric duct. Orthologous to human ATP5MC1 (ATP synthase membrane subunit c locus 1). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
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    Genomic context

    See atp5mc1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (23599294..23604234, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (23468746..23473686, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene insulin-like growth factor 2 mRNA binding protein 1 Neighboring gene ubiquitin-conjugating enzyme E2Z Neighboring gene uncharacterized LOC137490577 Neighboring gene even-skipped-like1 Neighboring gene homeobox B13a

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Pathways from PubChem

    General gene information

    Markers

    Clone Names

    • MGC86684

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables proton transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in proton motive force-driven ATP synthesis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within proton motive force-driven ATP synthesis IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrial membrane IEA
    Inferred from Electronic Annotation
    more info
     
    part_of proton-transporting ATP synthase complex, coupling factor F(o) IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of proton-transporting ATP synthase complex, coupling factor F(o) IEA
    Inferred from Electronic Annotation
    more info
     
    part_of proton-transporting two-sector ATPase complex, proton-transporting domain IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    ATP synthase F(0) complex subunit C1, mitochondrial
    Names
    ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213028.1NP_998193.1  ATP synthase F(0) complex subunit C1, mitochondrial

      See identical proteins and their annotated locations for NP_998193.1

      Status: PROVISIONAL

      Source sequence(s)
      BC071368
      UniProtKB/TrEMBL
      A0A8M1PNC9, Q6IQN6
      Related
      ENSDARP00000072885.4, ENSDART00000078423.6
      Conserved Domains (1) summary
      MTH00222
      Location:64138
      ATP9; ATP synthase F0 subunit 9; Provisional

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      23599294..23604234 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)