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    atp5pf ATP synthase peripheral stalk subunit F6 [ Danio rerio (zebrafish) ]

    Gene ID: 406599, updated on 2-Nov-2024

    Summary

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    Official Symbol
    atp5pfprovided by ZNC
    Official Full Name
    ATP synthase peripheral stalk subunit F6provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2534
    See related
    Ensembl:ENSDARG00000014313 AllianceGenome:ZFIN:ZDB-GENE-040426-2534
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    atp5j; zgc:77541; wu:fa66e04
    Summary
    Predicted to enable proton transmembrane transporter activity. Predicted to act upstream of or within proton motive force-driven ATP synthesis and proton transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be part of proton-transporting ATP synthase complex. Orthologous to human ATP5PF (ATP synthase peripheral stalk subunit F6). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See atp5pf in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (610327..614583, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (615148..619453, complement)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L39 Neighboring gene junctional adhesion molecule 2a Neighboring gene amyloid beta (A4) precursor protein a Neighboring gene cysteine/tyrosine-rich 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. CCN6 influences transcription and controls mitochondrial mass and muscle organization. Ganguly A, et al. FASEB J, 2023 Mar. PMID 36794678
    2. Eriocitrin ameliorates diet-induced hepatic steatosis with activation of mitochondrial biogenesis. Hiramitsu M, et al. Sci Rep, 2014 Jan 15. PMID 24424211, Free PMC Article
    3. Coronary Revascularization During Heart Regeneration Is Regulated by Epicardial and Endocardial Cues and Forms a Scaffold for Cardiomyocyte Repopulation. Marín-Juez R, et al. Dev Cell, 2019 Nov 18. PMID 31743664, Free PMC Article
    4. Variation of DNA Methylome of Zebrafish Cells under Cold Pressure. Han B, et al. PLoS One, 2016. PMID 27494266, Free PMC Article
    5. Stimulation of glycolysis promotes cardiomyocyte proliferation after injury in adult zebrafish. Fukuda R, et al. EMBO Rep, 2020 Aug 5. PMID 32648304, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables proton transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within proton motive force-driven ATP synthesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrial inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of proton-transporting ATP synthase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    ATP synthase-coupling factor 6, mitochondrial
    Names
    ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6
    ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6
    NP_998472.1
    XP_005168047.1
    XP_017208459.1
    XP_017208473.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213307.1 → NP_998472.1  ATP synthase-coupling factor 6, mitochondrial

      See identical proteins and their annotated locations for NP_998472.1

      Status: PROVISIONAL

      Source sequence(s)
      BC066613
      UniProtKB/TrEMBL
      A0A8M1PGT6, Q6NYF7
      Related
      ENSDARP00000005644.6, ENSDART00000004062.8
      Conserved Domains (1) summary
      pfam05511
      Location:1 → 99
      ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      610327..614583 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005167990.5 → XP_005168047.1  ATP synthase-coupling factor 6, mitochondrial isoform X2

      UniProtKB/TrEMBL
      A0A8M6YX34, B8JM34
      Related
      ENSDARP00000114450.1, ENSDART00000134456.3
      Conserved Domains (1) summary
      pfam05511
      Location:1 → 99
      ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6

    2. XM_017352984.3 → XP_017208473.1  ATP synthase-coupling factor 6, mitochondrial isoform X2

      UniProtKB/TrEMBL
      A0A8M6YX34, B8JM34
      Related
      ENSDARP00000113309.1, ENSDART00000147937.3
      Conserved Domains (1) summary
      pfam05511
      Location:1 → 99
      ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6

    3. XM_017352970.3 → XP_017208459.1  ATP synthase-coupling factor 6, mitochondrial isoform X1

      UniProtKB/TrEMBL
      A0A8M1PGT6, Q6NYF7
      Conserved Domains (1) summary
      pfam05511
      Location:1 → 99
      ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6
    Nucleotide Protein
    Heading Accession and Version

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