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    LOC4343734 transcription termination factor MTERF9, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343734, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4343734
    Gene description
    transcription termination factor MTERF9, chloroplastic
    Locus tag
    OSNPB_070583200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1127_E01.105
    Expression
    Broad expression in roots after flowering (RPKM 32.9), leaves after flowering (RPKM 31.7) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (23849098..23852665)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (23619600..23623178)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene polyol transporter 5 Neighboring gene uncharacterized LOC112939710 Neighboring gene putative zinc finger CCCH domain-containing protein 51 Neighboring gene uncharacterized LOC112939547 Neighboring gene uncharacterized LOC9266081

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in developmental process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription termination factor MTERF9, chloroplastic
    Names
    Os07g0583200
    mTERF protein V14

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001426617.1 → NP_001413546.1  transcription termination factor MTERF9, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK071674, AP014963, CI086238
      UniProtKB/TrEMBL
      A0A0P0X8D4, B8B7T4, Q0D545, Q84ZT1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      23849098..23852665
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311990.1 → XP_066168087.1  transcription termination factor MTERF9, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A0P0X8D4, B8B7T4, Q0D545, Q84ZT1
    Nucleotide Protein
    Heading Accession and Version

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