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    LOC4343645 polygalacturonase inhibitor 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343645, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4343645
    Gene description
    polygalacturonase inhibitor 1-like
    Locus tag
    OSNPB_070568700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    FOR1; PGIP-1; OsJ_24796; OJ1019_E02.4
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    Genomic context

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    See LOC4343645 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (23103685..23105135, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (22874256..22875729, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein TIC 20-I, chloroplastic Neighboring gene calcium-dependent protein kinase 20-like Neighboring gene uncharacterized LOC4343647 Neighboring gene uncharacterized LOC4343648

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice. Jang S, et al. Plant Mol Biol, 2003 Oct. PMID 14750524
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polygalacturonase inhibitor 1
    Names
    LOC_Os07g38130
    Polygalacturonase-inhibiting protein 1
    floral organ regulator 1
    floral organ regulator 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403122.1 → NP_001390051.1  polygalacturonase inhibitor 1 precursor

      Status: VALIDATED

      Source sequence(s)
      AU077913, CB643830, CI377519, CI580480
      UniProtKB/Swiss-Prot
      Q0D5C7, Q8GT95
      UniProtKB/TrEMBL
      A0A5B8HWW6, A2YMS8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      23103685..23105135 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GT95.1 GenPept UniProtKB/Swiss-Prot:Q8GT95

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