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    LOC4345656 extracellular ribonuclease LE [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345656, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345656
    Gene description
    extracellular ribonuclease LE
    Locus tag
    OSNPB_080434100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0413H11.4
    Expression
    Broad expression in flower buds (RPKM 50.6), roots before flowering (RPKM 41.3) and 5 other tissues See more
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    Genomic context

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    See LOC4345656 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (21188009..21190385)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (21050477..21052848)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R44/J54/Z268 family Neighboring gene pentatricopeptide repeat-containing protein At3g47530 Neighboring gene malate dehydrogenase, chloroplastic Neighboring gene probable glucomannan 4-beta-mannosyltransferase 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribonuclease T2 activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    extracellular ribonuclease LE
    Names
    Os08g0434100
    P0431A03.26
    ribonuclease

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      21188009..21190385
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795385.3 → XP_015650871.1  extracellular ribonuclease LE

      UniProtKB/TrEMBL
      Q6ZA89, Q7GC42, Q9FEG7, Q9FRU0
      Conserved Domains (1) summary
      pfam00445
      Location:27 → 211
      Ribonuclease_T2; Ribonuclease T2 family
    Nucleotide Protein
    Heading Accession and Version

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