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    LOC4346411 PI-PLC X domain-containing protein At5g67130 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346411, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4346411
    Gene description
    PI-PLC X domain-containing protein At5g67130
    Locus tag
    OSNPB_090115600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0563F09.1; OJ1310_F05.17
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    Genomic context

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    See LOC4346411 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (5246646..5258495, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (1226600..1238519, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene polyadenylate-binding protein 2 Neighboring gene CBS domain-containing protein CBSX1, chloroplastic Neighboring gene uncharacterized LOC112936392 Neighboring gene uncharacterized LOC136351842

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphoric diester hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PI-PLC X domain-containing protein At5g67130
    Names
    MAP3K protein kinase-like protein
    Os09g0115600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      5246646..5258495 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026020243.2 → XP_025876028.1  PI-PLC X domain-containing protein At5g67130

      UniProtKB/TrEMBL
      B9G254, Q6YW97
      Conserved Domains (1) summary
      cd08588
      Location:60 → 333
      PI-PLCc_At5g67130_like; Catalytic domain of Arabidopsis thaliana PI-PLC X domain-containing protein At5g67130 and its uncharacterized homologs
    Nucleotide Protein
    Heading Accession and Version

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