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    LOC4336365 ammonium transporter 1 member 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336365, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4336365
    Gene description
    ammonium transporter 1 member 1-like
    Locus tag
    OSNPB_040509600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    AMT1; AMT1-1; OsAMT1; OsAMT1;1; OsJ_15423
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (26001246..26003360)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (25500448..25502592)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene endoribonuclease Dicer homolog 4-like Neighboring gene uncharacterized LOC4336363 Neighboring gene uncharacterized LOC4336366 Neighboring gene transcriptional corepressor LEUNIG_HOMOLOG

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The OsAMT1.1 gene functions in ammonium uptake and ammonium-potassium homeostasis over low and high ammonium concentration ranges. Li C, et al. J Genet Genomics, 2016 Nov 20. PMID 27889499
    2. Identification of a high affinity NH4+ transporter from plants. Ninnemann O, et al. EMBO J, 1994 Aug 1. PMID 8062823, Free PMC Article
    3. Related to ABI3/VP1-Like 1 (RAVL1) regulates brassinosteroid-mediated activation of AMT1;2 in rice (Oryza sativa). Xuan YH, et al. J Exp Bot, 2017 Jan 1. PMID 28035023
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ammonium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ammonium homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ammonium transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ammonium transporter 1 member 1
    Names
    LOC_Os04g43070
    OSJNBb0065L13.7
    putative ammonium transporter OsAMT1p

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402398.1 → NP_001389327.1  ammonium transporter 1 member 1

      Status: VALIDATED

      Source sequence(s)
      AK073718, CI002070, CI598469
      UniProtKB/Swiss-Prot
      A0A0P0WCB2, O04400, Q56UT5, Q7XQ12, Q947N1
      UniProtKB/TrEMBL
      A2XVF3, Q01HF3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      26001246..26003360
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XQ12.1 GenPept UniProtKB/Swiss-Prot:Q7XQ12

    Gene LinkOut

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