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    LOC4345219 pentatricopeptide repeat-containing protein At5g65560 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345219, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4345219
    Gene description
    pentatricopeptide repeat-containing protein At5g65560
    Locus tag
    OSNPB_080300700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4345219 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (12456139..12465031)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (12381528..12390433)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene putative chloride channel-like protein CLC-g Neighboring gene uncharacterized LOC107281871 Neighboring gene uncharacterized LOC9271909 Neighboring gene uncharacterized LOC107277737

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chloroplast-nucleus signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitochondria-nucleus signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At5g65560
    Names
    Os08g0300700
    P0045D08.129
    putative pentatricopeptide (PPR) repeat-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      12456139..12465031
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066303474.1 → XP_066159571.1  pentatricopeptide repeat-containing protein At5g65560

      UniProtKB/TrEMBL
      A0A0P0XEG7, C8TEX7, Q6ZDB7

    2. XM_015795500.3 → XP_015650986.1  pentatricopeptide repeat-containing protein At5g65560

      UniProtKB/TrEMBL
      A0A0P0XEG7, C8TEX7, Q6ZDB7
      Conserved Domains (2) summary
      sd00004
      Location:214 → 241
      PPR; PPR repeat [structural motif]
      cl25449
      Location:48 → 480
      PPR_2; PPR repeat family

    3. XM_015795499.3 → XP_015650985.1  pentatricopeptide repeat-containing protein At5g65560

      UniProtKB/TrEMBL
      A0A0P0XEG7, C8TEX7, Q6ZDB7
      Conserved Domains (2) summary
      sd00004
      Location:214 → 241
      PPR; PPR repeat [structural motif]
      cl25449
      Location:48 → 480
      PPR_2; PPR repeat family

    4. XM_066303476.1 → XP_066159573.1  pentatricopeptide repeat-containing protein At5g65560

      UniProtKB/TrEMBL
      A0A0P0XEG7, C8TEX7, Q6ZDB7

    5. XM_066303475.1 → XP_066159572.1  pentatricopeptide repeat-containing protein At5g65560

      UniProtKB/TrEMBL
      A0A0P0XEG7, C8TEX7, Q6ZDB7

    6. XM_015795504.3 → XP_015650990.1  pentatricopeptide repeat-containing protein At5g65560

      UniProtKB/TrEMBL
      A0A0P0XEG7, C8TEX7, Q6ZDB7
      Conserved Domains (2) summary
      sd00004
      Location:214 → 241
      PPR; PPR repeat [structural motif]
      cl25449
      Location:48 → 480
      PPR_2; PPR repeat family

    7. XM_015795498.3 → XP_015650984.1  pentatricopeptide repeat-containing protein At5g65560

      UniProtKB/TrEMBL
      A0A0P0XEG7, C8TEX7, Q6ZDB7
      Conserved Domains (2) summary
      sd00004
      Location:214 → 241
      PPR; PPR repeat [structural motif]
      cl25449
      Location:48 → 480
      PPR_2; PPR repeat family

    8. XM_015795506.3 → XP_015650992.1  pentatricopeptide repeat-containing protein At5g65560

      UniProtKB/TrEMBL
      A0A0P0XEG7, C8TEX7, Q6ZDB7
      Conserved Domains (2) summary
      sd00004
      Location:214 → 241
      PPR; PPR repeat [structural motif]
      cl25449
      Location:48 → 480
      PPR_2; PPR repeat family

    9. XM_015795507.3 → XP_015650993.1  pentatricopeptide repeat-containing protein At5g65560

      UniProtKB/TrEMBL
      A0A0P0XEG7, C8TEX7, Q6ZDB7
      Conserved Domains (2) summary
      sd00004
      Location:214 → 241
      PPR; PPR repeat [structural motif]
      cl25449
      Location:48 → 480
      PPR_2; PPR repeat family

    10. XM_015795510.3 → XP_015650996.1  pentatricopeptide repeat-containing protein At5g65560

      UniProtKB/TrEMBL
      A0A0P0XEG7, C8TEX7, Q6ZDB7
      Conserved Domains (2) summary
      sd00004
      Location:214 → 241
      PPR; PPR repeat [structural motif]
      cl25449
      Location:48 → 480
      PPR_2; PPR repeat family

    11. XM_015795508.3 → XP_015650994.1  pentatricopeptide repeat-containing protein At5g65560

      UniProtKB/TrEMBL
      A0A0P0XEG7, C8TEX7, Q6ZDB7
      Conserved Domains (2) summary
      sd00004
      Location:214 → 241
      PPR; PPR repeat [structural motif]
      cl25449
      Location:48 → 480
      PPR_2; PPR repeat family

    12. XM_015795509.3 → XP_015650995.1  pentatricopeptide repeat-containing protein At5g65560

      UniProtKB/TrEMBL
      A0A0P0XEG7, C8TEX7, Q6ZDB7
      Conserved Domains (2) summary
      sd00004
      Location:214 → 241
      PPR; PPR repeat [structural motif]
      cl25449
      Location:48 → 480
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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