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    LOC4324245 farnesyl pyrophosphate synthase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324245, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324245
    Gene description
    farnesyl pyrophosphate synthase
    Locus tag
    OSNPB_010703400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    FPPS1
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    Genomic context

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    See LOC4324245 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (29746470..29750752)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29158251..29162549)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene nuclear poly(A) polymerase 4 Neighboring gene E3 ubiquitin-protein ligase At4g11680 Neighboring gene AP-1 complex subunit mu-2 Neighboring gene uncharacterized LOC136355478

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning of a cDNA that encodes farnesyl diphosphate synthase and the blue-light-induced expression of the corresponding gene in the leaves of rice plants. Sanmiya K, et al. Biochim Biophys Acta, 1997 Feb 28. PMID 9061016
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables dimethylallyltranstransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables geranyltranstransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in farnesyl diphosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    farnesyl pyrophosphate synthase
    Names
    Os01g0703400
    P0421H07.25
    farnesyl diphosphate synthase
    putative farnesyl pyrophosphate synthetase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      29746470..29750752
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772643.3 → XP_015628129.1  farnesyl pyrophosphate synthase

      UniProtKB/TrEMBL
      A2ZWZ6, O04882, Q7F5K4
      Conserved Domains (1) summary
      pfam00348
      Location:44 → 308
      polyprenyl_synt; Polyprenyl synthetase
    Nucleotide Protein
    Heading Accession and Version

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