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    LOC4346741 26S proteasome non-ATPase regulatory subunit 2 homolog A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346741, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346741
    Gene description
    26S proteasome non-ATPase regulatory subunit 2 homolog A
    Locus tag
    OSNPB_090326800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsRPN1a; P0706E03.1
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    Genomic context

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    See LOC4346741 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (13953428..13961621)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (9620360..9628461)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351912 Neighboring gene uncharacterized LOC136351692 Neighboring gene protein transport protein yos1 Neighboring gene eukaryotic translation initiation factor 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables enzyme regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome regulatory particle, base subcomplex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in proteasome storage granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    26S proteasome non-ATPase regulatory subunit 2 homolog A
    Names
    26S proteasome regulatory particle non-ATPase subunit1a
    Os09g0326800
    P0692F07.34
    putative proteasome 26S non-ATPase subunit 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      13953428..13961621
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756998.3 → XP_015612484.1  26S proteasome non-ATPase regulatory subunit 2 homolog A

      UniProtKB/TrEMBL
      B8BEG9, Q0J2L4, Q6K2Q1
      Conserved Domains (3) summary
      COG5110
      Location:37 → 890
      RPN1; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
      pfam01851
      Location:485 → 514
      PC_rep; Proteasome/cyclosome repeat
      sd00044
      Location:653 → 681
      HEAT; HEAT repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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