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    LOC4324934 serine/threonine-protein kinase SAPK4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324934, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4324934
    Gene description
    serine/threonine-protein kinase SAPK4-like
    Locus tag
    OSNPB_010869900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RK2; SAPK4; OsSAPK4; OsJ_04228
    Expression
    Broad expression in flower buds (RPKM 90.7), flowers (RPKM 85.1) and 6 other tissues See more
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    Genomic context

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    See LOC4324934 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38338861..38343502)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37710232..37714818)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112937602 Neighboring gene photosystem II 22 kDa protein 1, chloroplastic Neighboring gene probable ion channel POLLUX Neighboring gene uncharacterized LOC107276856 Neighboring gene DNA repair protein XRCC2 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Differential activation of the rice sucrose nonfermenting1-related protein kinase2 family by hyperosmotic stress and abscisic acid. Kobayashi Y, et al. Plant Cell, 2004 May. PMID 15084714, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine-protein kinase SAPK4
    Names
    LOC_Os01g64970
    Osmotic stress/abscisic acid-activated protein kinase 4
    P0039A07.8-1
    P0039A07.8-2
    P0677H08.40-1
    P0677H08.40-2
    RK2 kinase
    serine/threonine protein kinase SAPK4-like protein
    stress-activated protein kinase 4
    NP_001383791.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001396862.1 → NP_001383791.1  serine/threonine-protein kinase SAPK4

      Status: VALIDATED

      Source sequence(s)
      AB125305, CI247969
      UniProtKB/Swiss-Prot
      A0A0U1UA40, F6M7C8, Q0JHD4, Q5N942, Q943J9
      UniProtKB/TrEMBL
      A2WXE0, Q206Y6
      Conserved Domains (1) summary
      cd14662
      Location:3 → 259
      STKc_SnRK2; Catalytic domain of the Serine/Threonine Kinases, Sucrose nonfermenting 1-related protein kinase subfamily 2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      38338861..38343502
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5N942.2 GenPept UniProtKB/Swiss-Prot:Q5N942

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