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    LOC4343216 serine/threonine-protein kinase STY17 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343216, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4343216
    Gene description
    serine/threonine-protein kinase STY17
    Locus tag
    OSNPB_070475900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 22.7), roots after flowering (RPKM 15.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (17364092..17375126, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (17198547..17209525, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene auxin-responsive protein SAUR68 Neighboring gene probable rRNA-processing protein EBP2 homolog Neighboring gene uncharacterized LOC112939591 Neighboring gene protein CTR9 homolog Neighboring gene uncharacterized LOC136357312

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine-protein kinase STY17
    Names
    Os07g0475900
    P0571D04.125
    putative serine/threonine protein kinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      17364092..17375126 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791912.3 → XP_015647398.1  serine/threonine-protein kinase STY17 isoform X2

      UniProtKB/TrEMBL
      A0A0P0X6M1, B8B5Z6, B9FX64
      Conserved Domains (2) summary
      cd04928
      Location:140 → 204
      ACT_TyrKc; Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains
      cd13999
      Location:259 → 501
      STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases

    2. XM_015791911.3 → XP_015647397.1  serine/threonine-protein kinase STY17 isoform X1

      UniProtKB/TrEMBL
      A0A0P0X6M1
      Conserved Domains (3) summary
      cd04928
      Location:140 → 204
      ACT_TyrKc; Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains
      smart00219
      Location:253 → 501
      TyrKc; Tyrosine kinase, catalytic domain
      cd13999
      Location:259 → 501
      STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases
    Nucleotide Protein
    Heading Accession and Version

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