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    LOC4345455 serine/arginine-rich splicing factor SR45a [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345455, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4345455
    Gene description
    serine/arginine-rich splicing factor SR45a
    Locus tag
    OSNPB_080385900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0434E03.1
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    Genomic context

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    See LOC4345455 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (18325009..18331372)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (18189411..18195723)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351309 Neighboring gene uncharacterized LOC107281814 Neighboring gene uncharacterized LOC9268069 Neighboring gene transcription factor WRKY19-like Neighboring gene cytochrome B5-like protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/arginine-rich splicing factor SR45a
    Names
    B1090H08.54
    Os08g0385900
    putative transformer-SR ribonucleoprotein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      18325009..18331372
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794912.3 → XP_015650398.1  serine/arginine-rich splicing factor SR45a isoform X1

      UniProtKB/TrEMBL
      A0A0P0XF46, B9G0P8, Q6YW54
      Conserved Domains (2) summary
      smart00360
      Location:92 → 164
      RRM; RNA recognition motif
      COG0724
      Location:19 → 168
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

    2. XM_066312922.1 → XP_066169019.1  serine/arginine-rich splicing factor SR45a isoform X2

    Nucleotide Protein
    Heading Accession and Version

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