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    LOC4338101 uncharacterized LOC4338101 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338101, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4338101
    Gene description
    uncharacterized LOC4338101
    Locus tag
    OSNPB_050212400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 23.1), roots after flowering (RPKM 16.8) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (6980839..6987506, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (6957379..6964201, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4338099 Neighboring gene endoglucanase 15-like Neighboring gene uncharacterized LOC112939023 Neighboring gene bisdemethoxycurcumin synthase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4338101
    Names
    Os05g0212400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      6980839..6987506 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782017.3 → XP_015637503.1  uncharacterized protein LOC4338101 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WJF5
      Conserved Domains (1) summary
      TIGR01589
      Location:56 → 112
      A_thal_3526; uncharacterized plant-specific domain TIGR01589

    2. XM_015782015.3 → XP_015637501.1  uncharacterized protein LOC4338101 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WJF5, B9FIV4
      Conserved Domains (1) summary
      TIGR01589
      Location:56 → 112
      A_thal_3526; uncharacterized plant-specific domain TIGR01589

    3. XM_066310954.1 → XP_066167051.1  uncharacterized protein LOC4338101 isoform X3

      UniProtKB/TrEMBL
      Q6L4I0

    4. XM_066310953.1 → XP_066167050.1  uncharacterized protein LOC4338101 isoform X3

      UniProtKB/TrEMBL
      Q6L4I0

    5. XM_015782016.3 → XP_015637502.1  uncharacterized protein LOC4338101 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WJF5
      Conserved Domains (1) summary
      TIGR01589
      Location:56 → 112
      A_thal_3526; uncharacterized plant-specific domain TIGR01589

    6. XM_015782014.3 → XP_015637500.1  uncharacterized protein LOC4338101 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WJF5, B9FIV4
      Conserved Domains (1) summary
      TIGR01589
      Location:56 → 112
      A_thal_3526; uncharacterized plant-specific domain TIGR01589

    7. XM_015782018.2 → XP_015637504.1  uncharacterized protein LOC4338101 isoform X3

      UniProtKB/TrEMBL
      Q6L4I0
      Conserved Domains (1) summary
      pfam09713
      Location:1 → 40
      A_thal_3526; Plant protein 1589 of unknown function (A_thal_3526)
    Nucleotide Protein
    Heading Accession and Version

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