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    LOC4329199 AUGMIN subunit 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329199, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329199
    Gene description
    AUGMIN subunit 6
    Locus tag
    OSNPB_020329300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1521_G01.18
    Expression
    Ubiquitous expression in flower buds (RPKM 26.0), flowers (RPKM 24.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (13385775..13396417)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (13349866..13360581)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9272156 Neighboring gene uncharacterized LOC107280041 Neighboring gene uncharacterized LOC4329202 Neighboring gene beta-1,2-xylosyltransferease XAX1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in spindle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of HAUS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitotic spindle microtubule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AUGMIN subunit 6
    Names
    Os02g0329300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      13385775..13396417
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770076.3 → XP_015625562.1  AUGMIN subunit 6

      UniProtKB/TrEMBL
      A0A0P0VID9, B8AGN4, Q0E1K8, Q6Z7I5
      Conserved Domains (1) summary
      pfam14661
      Location:42 → 263
      HAUS6_N; HAUS augmin-like complex subunit 6 N-terminus
    Nucleotide Protein
    Heading Accession and Version

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