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    LOC4335144 pumilio homolog 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335144, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4335144
    Gene description
    pumilio homolog 3
    Locus tag
    OSNPB_040201200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4335144 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (6996884..7003803, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (6902836..6909848, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9269530 Neighboring gene uncharacterized LOC9272060 Neighboring gene amino acid transporter AVT1C Neighboring gene protein MAIN-LIKE 1-like Neighboring gene uncharacterized LOC107280504 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in post-transcriptional regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pumilio homolog 3
    Names
    Os04g0201200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      6996884..7003803 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778079.3 → XP_015633565.1  pumilio homolog 3

      UniProtKB/TrEMBL
      Q25AF8, Q7FAZ6
      Conserved Domains (1) summary
      cd07920
      Location:444 → 761
      Pumilio; Pumilio-family RNA binding domain
    Nucleotide Protein
    Heading Accession and Version

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