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    LOC4336049 amino acid transporter AVT1I [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336049, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4336049
    Gene description
    amino acid transporter AVT1I
    Locus tag
    OSNPB_040460300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4336049 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (23472046..23474575)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22977800..22980352)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene protease Do-like 8, chloroplastic Neighboring gene amino acid transporter AVT1I-like Neighboring gene uncharacterized LOC112938644 Neighboring gene casparian strip membrane protein 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables amino acid transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in amino acid transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    amino acid transporter AVT1I
    Names
    Os04g0460300
    vacuolar amino acid transporter 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      23472046..23474575
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781436.3 → XP_015636922.1  amino acid transporter AVT1I

      UniProtKB/TrEMBL
      A0A0P0WB31, B8AUQ9, B9FFJ2, Q01IJ0, Q7XUV8
      Conserved Domains (1) summary
      cl00456
      Location:66 → 445
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    Nucleotide Protein
    Heading Accession and Version

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