LOC4336052 NAC domain-containing protein 92 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4336052
Gene description: NAC domain-containing protein 92
Locus tag: OSNPB_040460600
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: NAC2; NAC4; TIL1; OsNAC2; OsTIL1; ONAC004; OsJ_15058
Expression: Biased expression in roots before flowering (RPKM 31.6), flowers (RPKM 28.0) and 3 other tissues See more
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Genomic context

Location:: chromosome: 4

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	4	NC_089038.1 (23488770..23490977)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	4	NC_029259.1 (22994474..22996694)

Chromosome 4 - NC_089038.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: nAC domain-containing protein 4

Names: LOC_Os04g38720; NAC domain protein; NAC domain-containing protein 4; OSJNBa0072F16.10; Os04g0460600; Protein TILLERING 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001419399.1 → NP_001406328.1 nAC domain-containing protein 4

Status: VALIDATED

Source sequence(s)

CI134423, CI288363, CI530686, CI627434, DQ520641

UniProtKB/Swiss-Prot

B9FFJ4, Q1G0X7, Q7XUV6, Q8H0I4

UniProtKB/TrEMBL

B8AUR1, Q01II7

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089038.1 Reference ASM3414082v1 Primary Assembly

Range

23488770..23490977

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015778438.3 → XP_015633924.1 nAC domain-containing protein 4 isoform X1

UniProtKB/Swiss-Prot

B9FFJ4, Q1G0X7, Q7XUV6, Q8H0I4

UniProtKB/TrEMBL

B8AUR1, Q01II7

Conserved Domains (1) summary

pfam02365
Location:13 → 137

NAM; No apical meristem (NAM) protein