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    LOC4334119 universal stress protein A-like protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334119, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334119
    Gene description
    universal stress protein A-like protein
    Locus tag
    OSNPB_030750000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in mature seeds (RPKM 170.9), milk grains (RPKM 165.1) and 1 other tissue See more
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    Genomic context

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    See LOC4334119 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (31784702..31785918, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (30901814..30903047, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase TOUSLED Neighboring gene uncharacterized LOC4334118 Neighboring gene uncharacterized LOC136355621 Neighboring gene uncharacterized LOC4334120

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    universal stress protein A-like protein
    Names
    Os03g0750000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      31784702..31785918 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776400.3 → XP_015631886.1  universal stress protein A-like protein isoform X4

      UniProtKB/TrEMBL
      B8AJW5, Q10CT6, Q75LL0
      Conserved Domains (1) summary
      cd00293
      Location:26 → 174
      USP_Like; Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to ...

    2. XM_015776399.3 → XP_015631885.1  universal stress protein A-like protein isoform X3

      UniProtKB/TrEMBL
      B8AJW5
      Conserved Domains (1) summary
      cd00293
      Location:26 → 175
      USP_Like; Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to ...

    3. XM_015776398.3 → XP_015631884.1  universal stress protein A-like protein isoform X2

      UniProtKB/TrEMBL
      B8AJW5
      Conserved Domains (1) summary
      cd00293
      Location:26 → 177
      USP_Like; Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to ...

    4. XM_015776397.3 → XP_015631883.1  universal stress protein A-like protein isoform X1

      UniProtKB/TrEMBL
      B8AJW5
      Conserved Domains (1) summary
      cd00293
      Location:26 → 178
      USP_Like; Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to ...
    Nucleotide Protein
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