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    LOC4332100 uncharacterized LOC4332100 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332100, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4332100
    Gene description
    uncharacterized LOC4332100
    Locus tag
    OSNPB_030221800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 11.5), roots before flowering (RPKM 11.3) and 6 other tissues See more
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    Genomic context

    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (6427851..6436396, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (6380281..6388969, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene glucan endo-1,3-beta-glucosidase 3 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 Neighboring gene MA3 DOMAIN-CONTAINING TRANSLATION REGULATORY FACTOR 2 Neighboring gene F-box/LRR-repeat protein At3g03360-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    uncharacterized protein LOC4332100
    Names
    Os03g0221800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      6427851..6436396 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775924.3XP_015631410.1  uncharacterized protein LOC4332100 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VUV4, A2XE18, Q8H820
      Conserved Domains (2) summary
      sd00033
      Location:200221
      LRR_RI; leucine-rich repeat [structural motif]
      cd21340
      Location:192327
      PPP1R42; protein phosphatase 1 regulatory subunit 42
    2. XM_015775925.3XP_015631411.1  uncharacterized protein LOC4332100 isoform X2

      UniProtKB/TrEMBL
      A3AFL2, Q10PT8
      Conserved Domains (3) summary
      cd00116
      Location:3151
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:4768
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:95149
      LRR_8; Leucine rich repeat

    RNA

    1. XR_010739848.1 RNA Sequence