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    LOC9266656 AP2-like ethylene-responsive transcription factor At1g16060 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9266656, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC9266656
    Gene description
    AP2-like ethylene-responsive transcription factor At1g16060
    Locus tag
    OSNPB_110129700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ap2-1; OsANTL
    Expression
    Broad expression in milk grains (RPKM 2.7), flower buds (RPKM 2.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (1408920..1414254, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (1364226..1369812, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At1g71250 Neighboring gene uncharacterized LOC4349666 Neighboring gene uncharacterized LOC4349668 Neighboring gene transfer RNA alanine (anticodon UGC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Development of an efficient method for the isolation of factors involved in gene transcription during rice embryo development. Ye R, et al. Plant J, 2004 Apr. PMID 15078336
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP2-like ethylene-responsive transcription factor At1g16060
    Names
    Os11g0129700
    aintegumenta-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      1408920..1414254 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066305614.1 → XP_066161711.1  AP2-like ethylene-responsive transcription factor At1g16060 isoform X2

      UniProtKB/TrEMBL
      A3C873, Q2MGU2

    2. XM_015762465.3 → XP_015617951.1  AP2-like ethylene-responsive transcription factor At1g16060 isoform X1

      UniProtKB/TrEMBL
      Q2MGU2, Q2RB16
      Conserved Domains (2) summary
      smart00380
      Location:83 → 156
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
      cd00018
      Location:185 → 246
      AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...
    Nucleotide Protein
    Heading Accession and Version

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