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    LOC4344358 aldehyde dehydrogenase 22A1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344358, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4344358
    Gene description
    aldehyde dehydrogenase 22A1
    Locus tag
    OSNPB_070688800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1165_F02.119
    Expression
    Ubiquitous expression in flower buds (RPKM 23.3), flowers (RPKM 18.1) and 6 other tissues See more
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    Genomic context

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    See LOC4344358 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29505729..29511806, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29271581..29277755, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene transcription factor bHLH149 Neighboring gene uncharacterized LOC136357468 Neighboring gene uncharacterized LOC136357234 Neighboring gene uncharacterized LOC107281548

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular aldehyde metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aldehyde dehydrogenase 22A1
    Names
    Os07g0688800
    P0597G07.102
    betaine aldehyde dehydrogenase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      29505729..29511806 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792319.3 → XP_015647805.1  aldehyde dehydrogenase 22A1 isoform X2

      UniProtKB/TrEMBL
      B8B6C8, B9FUZ6
      Conserved Domains (1) summary
      cd07098
      Location:69 → 518
      ALDH_F15-22; Aldehyde dehydrogenase family 15A1 and 22A1-like

    2. XM_015792318.3 → XP_015647804.1  aldehyde dehydrogenase 22A1 isoform X1

      UniProtKB/TrEMBL
      A0A0P0XAL1, B8B6C8, B9FUZ6, Q8H5F0
      Conserved Domains (1) summary
      cd07098
      Location:69 → 531
      ALDH_F15-22; Aldehyde dehydrogenase family 15A1 and 22A1-like

    3. XM_066312465.1 → XP_066168562.1  aldehyde dehydrogenase 22A1 isoform X3

    Nucleotide Protein
    Heading Accession and Version

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