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    LOC4342372 U4/U6 small nuclear ribonucleoprotein Prp31 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342372, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4342372
    Gene description
    U4/U6 small nuclear ribonucleoprotein Prp31 homolog
    Locus tag
    OSNPB_070141600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1351_C05.114
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    Genomic context

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    See LOC4342372 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (2155430..2164134)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (2144127..2152184)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene oxygen-evolving enhancer protein 2, chloroplastic Neighboring gene classical arabinogalactan protein 9 Neighboring gene disease resistance protein PIK6-NP Neighboring gene uncharacterized LOC107275575 Neighboring gene disease resistance protein RGA2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spliceosomal tri-snRNP complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U4 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U4/U6 small nuclear ribonucleoprotein Prp31 homolog
    Names
    Os07g0141600
    putative U4/U6 snRNP-associated 61 kDa protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      2155430..2164134
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791238.3 → XP_015646724.1  U4/U6 small nuclear ribonucleoprotein Prp31 homolog

      UniProtKB/TrEMBL
      A0A0P0X2D7, A2YI25, B8ASV6, Q0D8P4, Q8H4L0
      Conserved Domains (2) summary
      pfam01798
      Location:116 → 331
      Nop; snoRNA binding domain, fibrillarin
      pfam09785
      Location:346 → 456
      Prp31_C; Prp31 C terminal domain

    2. XM_026027166.2 → XP_025882951.1  U4/U6 small nuclear ribonucleoprotein Prp31 homolog

      UniProtKB/TrEMBL
      A0A0P0X2D7, A2YI25, B8ASV6, Q0D8P4, Q8H4L0
      Conserved Domains (2) summary
      pfam01798
      Location:116 → 331
      Nop; snoRNA binding domain, fibrillarin
      pfam09785
      Location:346 → 456
      Prp31_C; Prp31 C terminal domain

    3. XM_066312383.1 → XP_066168480.1  U4/U6 small nuclear ribonucleoprotein Prp31 homolog

      UniProtKB/TrEMBL
      A0A0P0X2D7, A2YI25, Q0D8P4, Q8H4L0

    RNA

    1. XR_001547598.3 RNA Sequence

    2. XR_001547599.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials