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    LOC4347321 purine permease 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347321, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4347321
    Gene description
    purine permease 3
    Locus tag
    OSNPB_090467400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0676H02.3; P0676H02.4
    Expression
    Ubiquitous expression in mature seeds (RPKM 3.5), roots after flowering (RPKM 2.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (22138724..22149419, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (17755678..17771401, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic Neighboring gene glutathione transferase GST 23 Neighboring gene purine permease 3 Neighboring gene purine permease 1-like Neighboring gene uncharacterized LOC4347323

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables purine nucleoside transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    purine permease 3
    Names
    Os09g0467400
    putative purine permease

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      22138724..22149419 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756307.3 → XP_015611793.1  purine permease 3 isoform X2

      UniProtKB/TrEMBL
      A0A0P0XMY6, B8BCN1, Q6K5F0
      Conserved Domains (2) summary
      pfam16913
      Location:26 → 342
      PUNUT; Purine nucleobase transmembrane transport
      cl23754
      Location:89 → 171
      EamA; EamA-like transporter family

    2. XM_015756306.3 → XP_015611792.1  purine permease 3 isoform X1

      UniProtKB/TrEMBL
      A0A0N7KQY7, B8BCN1, Q6K5E9
      Conserved Domains (1) summary
      pfam16913
      Location:26 → 342
      PUNUT; Purine nucleobase transmembrane transport
    Nucleotide Protein
    Heading Accession and Version

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