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    LOC4324906 LOB domain-containing protein 6-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324906, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4324906
    Gene description
    LOB domain-containing protein 6-like
    Locus tag
    OSNPB_010889400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    AS2; LBD6; CRLL3; OsJ_04355
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    Genomic context

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    See LOC4324906 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (39306702..39310189)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (38676174..38679641)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324904 Neighboring gene uncharacterized LOC4324905 Neighboring gene rhodanese-like domain-containing protein 4A, chloroplastic Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling. Inukai Y, et al. Plant Cell, 2005 May. PMID 15829602, Free PMC Article
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    lOB domain-containing protein 6
    Names
    B1099D03.43
    Crown rootless-like protein 3
    LOB domain protein 6
    LOC_Os01g66590
    Protein ASYMMETRIC LEAVES 2
    putative LOB DOMAIN 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001405449.1 → NP_001392378.1  lOB domain-containing protein 6

      Status: VALIDATED

      Source sequence(s)
      CB653953, CB653954, CI695858
      UniProtKB/Swiss-Prot
      A0A0P0VBD7, A2WXT0, A3A0D7, B2KKZ2, B7EJD3, B9EV98, Q8LQH4

    2. NM_001405450.1 → NP_001392379.1  lOB domain-containing protein 6

      Status: VALIDATED

      Source sequence(s)
      AK071407, CB653953, CI508362, CI695858
      UniProtKB/Swiss-Prot
      A0A0P0VBD7, A2WXT0, A3A0D7, B2KKZ2, B7EJD3, B9EV98, Q8LQH4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      39306702..39310189
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LQH4.1 GenPept UniProtKB/Swiss-Prot:Q8LQH4

    Gene LinkOut

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