U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4337800 uncharacterized LOC4337800 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337800, updated on 12-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4337800
    Gene description
    uncharacterized LOC4337800
    Locus tag
    OSNPB_050147150
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 11.5), leaves before flowering (RPKM 10.6) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4337800 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (2726769..2731242)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (2712368..2716811)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA Z247 Neighboring gene uncharacterized LOC107276126 Neighboring gene probable calcium-binding protein CML22 Neighboring gene T-complex protein 1 subunit zeta 1 Neighboring gene protease Do-like 2, chloroplastic

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ribosomal small subunit biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC4337800
    Names
    Os05g0147150
    Os05g0147200
    nucleolar MIF4G domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      2726769..2731242
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784309.3 → XP_015639795.1  uncharacterized protein LOC4337800

      UniProtKB/TrEMBL
      B8AXY4, B9FMF3
      Conserved Domains (3) summary
      PRK12279
      Location:12 → 101
      PRK12279; 50S ribosomal protein L22/unknown domain fusion protein; Provisional
      cl02652
      Location:269 → 476
      MIF4G; MIF4G domain
      cl02653
      Location:563 → 665
      MA3; MA3 domain

    2. XM_015784311.3 → XP_015639797.1  uncharacterized protein LOC4337800

      UniProtKB/TrEMBL
      B8AXY4, B9FMF3
      Conserved Domains (3) summary
      PRK12279
      Location:12 → 101
      PRK12279; 50S ribosomal protein L22/unknown domain fusion protein; Provisional
      cl02652
      Location:269 → 476
      MIF4G; MIF4G domain
      cl02653
      Location:563 → 665
      MA3; MA3 domain

    3. XM_015784310.3 → XP_015639796.1  uncharacterized protein LOC4337800

      UniProtKB/TrEMBL
      B8AXY4, B9FMF3
      Conserved Domains (3) summary
      PRK12279
      Location:12 → 101
      PRK12279; 50S ribosomal protein L22/unknown domain fusion protein; Provisional
      cl02652
      Location:269 → 476
      MIF4G; MIF4G domain
      cl02653
      Location:563 → 665
      MA3; MA3 domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials