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    LOC4327884 proline-rich receptor-like protein kinase PERK8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327884, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327884
    Gene description
    proline-rich receptor-like protein kinase PERK8
    Locus tag
    OSNPB_010738300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0638D12.4
    Expression
    Biased expression in flowers (RPKM 4.0), roots before flowering (RPKM 3.1) and 3 other tissues See more
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    Genomic context

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    See LOC4327884 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (31418601..31422842)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (30818784..30823211)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial Neighboring gene ubiquitin-like-specific protease 1D Neighboring gene zinc finger CCCH domain-containing protein 10-like Neighboring gene serine/threonine-protein phosphatase 7 long form homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proline-rich receptor-like protein kinase PERK8
    Names
    OSJNBb0021A09.30
    Os01g0738300
    putative receptor protein kinase PERK1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      31418601..31422842
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773185.3 → XP_015628671.1  proline-rich receptor-like protein kinase PERK8

      UniProtKB/TrEMBL
      B8A933, Q0JJH7, Q5JNC9
      Conserved Domains (1) summary
      cd14066
      Location:348 → 618
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    Nucleotide Protein
    Heading Accession and Version

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