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    LOC4330048 protein S40-4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330048, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330048
    Gene description
    protein S40-4
    Locus tag
    OSNPB_020629000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4330048 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (25639398..25640379, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (25153212..25154262, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-like protein 5 Neighboring gene uncharacterized LOC112937829 Neighboring gene probable aquaporin PIP2-2 Neighboring gene uncharacterized LOC136355424

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein S40-4
    Names
    B1469H02.18
    Os02g0629000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      25639398..25640379 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768539.3 → XP_015624025.1  protein S40-4

      UniProtKB/TrEMBL
      A2X7G6, Q0DZD4, Q6K219
      Conserved Domains (1) summary
      pfam04520
      Location:7 → 169
      Senescence_reg; Senescence regulator
    Nucleotide Protein
    Heading Accession and Version

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