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    LOC4337011 probable UDP-arabinose 4-epimerase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337011, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4337011
    Gene description
    probable UDP-arabinose 4-epimerase 2
    Locus tag
    OSNPB_040618200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    UEL-2; OsUEL-2; OsJ_16180
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    Genomic context

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    See LOC4337011 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (31911055..31914971)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (31403368..31407253)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon CCG) Neighboring gene pentatricopeptide repeat-containing protein At3g14580, mitochondrial Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene gamma-soluble NSF attachment protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables UDP-glucose 4-epimerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in galactose catabolic process via UDP-galactose IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable UDP-arabinose 4-epimerase 2
    Names
    LOC_Os04g52730
    OSJNBa0058K23.4
    OSJNBa0093O08.14
    UDP-D-xylose 4-epimerase 2
    UDP-galactose 4-epimerase-like protein 2
    NP_001389358.1
    NP_001389359.1
    XP_066165295.1
    XP_066165296.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402429.1 → NP_001389358.1  probable UDP-arabinose 4-epimerase 2

      Status: VALIDATED

      Source sequence(s)
      AB097461, CB651700, CI100269, CI137314, CI310177
      UniProtKB/Swiss-Prot
      B7EBH1, Q7X8J9, Q8H0B6

    2. NM_001402430.1 → NP_001389359.1  probable UDP-arabinose 4-epimerase 2

      Status: VALIDATED

      Source sequence(s)
      AB097461, CB651700, CI100269, CI137314, CI310177
      UniProtKB/Swiss-Prot
      B7EBH1, Q7X8J9, Q8H0B6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      31911055..31914971
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309198.1 → XP_066165295.1  probable UDP-arabinose 4-epimerase 2 isoform X1

      UniProtKB/Swiss-Prot
      B7EBH1, Q7X8J9, Q8H0B6

    2. XM_066309199.1 → XP_066165296.1  probable UDP-arabinose 4-epimerase 2 isoform X1

      UniProtKB/Swiss-Prot
      B7EBH1, Q7X8J9, Q8H0B6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H0B6.1 GenPept UniProtKB/Swiss-Prot:Q8H0B6

    Gene LinkOut

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