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    LOC4338430 cyclin-P4-1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338430, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4338430
    Gene description
    cyclin-P4-1-like
    Locus tag
    OSNPB_050327000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 1.5), flower buds (RPKM 1.1) and 6 other tissues See more
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    Genomic context

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    See LOC4338430 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (15244560..15246669, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (15163882..15166478, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene pumilio homolog 3 Neighboring gene uncharacterized LOC136351274 Neighboring gene uncharacterized LOC9270722 Neighboring gene uncharacterized LOC107281062

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein kinase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of cyclin-dependent protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclin-P4-1-like; uncharacterized protein LOC4338430
    Names
    Os05g0327000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      15244560..15246669 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311092.1 → XP_066167189.1  uncharacterized protein LOC4338430 isoform X2

      UniProtKB/TrEMBL
      B7ERZ0

    2. XM_015784038.3 → XP_015639524.1  uncharacterized protein LOC4338430 isoform X2

      UniProtKB/TrEMBL
      B7ERZ0

    3. XM_015784037.3 → XP_015639523.1  cyclin-P4-1-like isoform X1

      UniProtKB/TrEMBL
      A0A5S6RCL2, B9FGQ1, Q0DJ51, Q5W688
      Conserved Domains (1) summary
      cl00050
      Location:55 → 180
      CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...

    4. XM_015784036.3 → XP_015639522.1  cyclin-P4-1-like isoform X1

      UniProtKB/TrEMBL
      A0A5S6RCL2, B9FGQ1, Q0DJ51, Q5W688
      Conserved Domains (1) summary
      cl00050
      Location:55 → 180
      CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...
    Nucleotide Protein
    Heading Accession and Version

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