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    LOC4349330 cortical cell-delineating protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349330, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349330
    Gene description
    cortical cell-delineating protein
    Locus tag
    OSNPB_100552700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4349330 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (22386241..22387307, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (21693874..21694516, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 36 Neighboring gene 14 kDa proline-rich protein DC2.15 Neighboring gene cortical cell-delineating protein Neighboring gene 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    cortical cell-delineating protein
    Names
    Os10g0552700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      22386241..22387307 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759361.3 → XP_015614847.1  cortical cell-delineating protein

      UniProtKB/TrEMBL
      A0A0P0XXF0, Q0IVU5, Q7XCC4, Q9FWP8
      Conserved Domains (1) summary
      cd01958
      Location:37 → 122
      HPS_like; Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members ...
    Nucleotide Protein
    Heading Accession and Version

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