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    LOC4348352 protein OPAQUE1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348352, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4348352
    Gene description
    protein OPAQUE1
    Locus tag
    OSNPB_100339400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 32.3), leaves before flowering (RPKM 27.2) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    39
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (10399993..10419645)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (9897855..9917710)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107279074 Neighboring gene uncharacterized LOC107279075 Neighboring gene serine/threonine-protein kinase RIPK-like Neighboring gene alpha-L-fucosidase 2 Neighboring gene uncharacterized LOC136353621

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microfilament motor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle transport along actin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of myosin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein OPAQUE1
    Names
    Os10g0339400
    myosin-15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      10399993..10419645
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066304664.1 → XP_066160761.1  protein OPAQUE1

      UniProtKB/TrEMBL
      B8AJH3

    2. XM_015758583.3 → XP_015614069.1  protein OPAQUE1

      UniProtKB/TrEMBL
      B8AJH3
      Conserved Domains (2) summary
      COG5022
      Location:2 → 1492
      COG5022; Myosin heavy chain [General function prediction only]
      cd01384
      Location:74 → 718
      MYSc_Myo11; class XI myosin, motor domain
    Nucleotide Protein
    Heading Accession and Version

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