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    LOC4325211 triosephosphate isomerase, cytosolic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325211, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4325211
    Gene description
    triosephosphate isomerase, cytosolic-like
    Locus tag
    OSNPB_010147900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    TIM; TPI; TPI1.1; Rictpi2; OsJ_00367; P0434B04.9
    Expression
    Ubiquitous expression in flower buds (RPKM 568.4), flowers (RPKM 530.9) and 6 other tissues See more
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    Genomic context

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    See LOC4325211 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (2597626..2601615, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (2589773..2593636, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene factor of DNA methylation 1 Neighboring gene uncharacterized LOC4325210 Neighboring gene E3 ubiquitin-protein ligase PRT6 Neighboring gene uncharacterized LOC4325213

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables triose-phosphate isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in gluconeogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glyceraldehyde-3-phosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glycerol catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glycolytic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    triosephosphate isomerase, cytosolic
    Names
    LOC_Os01g05490
    P0416D03.45
    Triose-phosphate isomerase
    putative triosephosphate isomerase
    triosephosphate isomerase protein
    NP_001393157.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406228.1 → NP_001393157.1  triosephosphate isomerase, cytosolic

      Status: VALIDATED

      Source sequence(s)
      AU029551, AU057073, CA998011, CI005742, CI287329
      UniProtKB/Swiss-Prot
      P48494, Q0JQP8, Q7F7B3
      UniProtKB/TrEMBL
      B8AD93

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      2597626..2601615 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P48494.3 GenPept UniProtKB/Swiss-Prot:P48494

    Gene LinkOut

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    Research Materials