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    LOC4331604 uncharacterized LOC4331604 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331604, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4331604
    Gene description
    uncharacterized LOC4331604
    Locus tag
    OSNPB_030145700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 10.4), flower buds (RPKM 10.2) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (2540008..2546635)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (2531026..2537840)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4331602 Neighboring gene zinc finger CCCH domain-containing protein 48 Neighboring gene uncharacterized LOC136355568 Neighboring gene uncharacterized LOC4331605

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4331604
    Names
    Os03g0145700

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      2540008..2546635
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776426.3 → XP_015631912.1  uncharacterized protein LOC4331604

      UniProtKB/TrEMBL
      A0A0P0VT04, B9FB18, Q0DV73

    2. XM_066308279.1 → XP_066164376.1  uncharacterized protein LOC4331604

      UniProtKB/TrEMBL
      A0A0P0VT04, B9FB18, Q0DV73

    3. XM_066308280.1 → XP_066164377.1  uncharacterized protein LOC4331604

      UniProtKB/TrEMBL
      A0A0P0VT04, B9FB18, Q0DV73

    4. XM_066308282.1 → XP_066164379.1  uncharacterized protein LOC4331604

      UniProtKB/TrEMBL
      A0A0P0VT04, B9FB18, Q0DV73

    5. XM_066308278.1 → XP_066164375.1  uncharacterized protein LOC4331604

      UniProtKB/TrEMBL
      A0A0P0VT04, B9FB18, Q0DV73

    6. XM_066308283.1 → XP_066164380.1  uncharacterized protein LOC4331604

      UniProtKB/TrEMBL
      A0A0P0VT04, B9FB18, Q0DV73
    Nucleotide Protein
    Heading Accession and Version

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