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    LOC4327836 secretory carrier-associated membrane protein 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327836, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4327836
    Gene description
    secretory carrier-associated membrane protein 2-like
    Locus tag
    OSNPB_010780500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SC; RiSC; SCAMP2
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 67.1), roots after flowering (RPKM 62.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (33665042..33670559)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (33059174..33064694)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4326437 Neighboring gene katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 Neighboring gene BTB/POZ domain-containing protein At5g03250 Neighboring gene protein ULTRAPETALA 1 Neighboring gene vacuolar protein sorting-associated protein 28 homolog 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in recycling endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    secretory carrier-associated membrane protein 2
    Names
    LOC_Os01g57220
    P0010B10.29
    Secretory carrier membrane protein 2
    putative secretory carrier membrane protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401731.1 → NP_001388660.1  secretory carrier-associated membrane protein 2

      Status: VALIDATED

      Source sequence(s)
      AU164980, AU164981, C98157, CI583386
      UniProtKB/Swiss-Prot
      B7EEY2, Q7F613, Q9M5P1
      UniProtKB/TrEMBL
      B8AAF2, B9ETC3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      33665042..33670559
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7F613.1 GenPept UniProtKB/Swiss-Prot:Q7F613

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