U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4340647 inactive poly [ADP-ribose] polymerase RCD1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340647, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4340647
    Gene description
    inactive poly [ADP-ribose] polymerase RCD1
    Locus tag
    OSNPB_060248400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4340647 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (7867169..7872624)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (7698432..7704852)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277995 Neighboring gene uncharacterized LOC9272659 Neighboring gene U-box domain-containing protein 21 Neighboring gene uncharacterized LOC107277464 Neighboring gene protein FAR1-RELATED SEQUENCE 5-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD+-protein poly-ADP-ribosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    inactive poly [ADP-ribose] polymerase RCD1; uncharacterized protein LOC4340647
    Names
    OSJNBa0091G06.7
    Os06g0248400
    putative ceo protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      7867169..7872624
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788244.3 → XP_015643730.1  inactive poly [ADP-ribose] polymerase RCD1 isoform X1

      Conserved Domains (3) summary
      pfam00644
      Location:215 → 393
      PARP; Poly(ADP-ribose) polymerase catalytic domain
      pfam12174
      Location:435 → 500
      RST; RCD1-SRO-TAF4 (RST) plant domain
      cl02729
      Location:78 → 134
      WWE; WWE domain

    2. XM_066311580.1 → XP_066167677.1  inactive poly [ADP-ribose] polymerase RCD1 isoform X2

    3. XM_026026340.2 → XP_025882125.1  inactive poly [ADP-ribose] polymerase RCD1 isoform X3

      UniProtKB/TrEMBL
      B9FSI7
      Conserved Domains (3) summary
      pfam00644
      Location:204 → 393
      PARP; Poly(ADP-ribose) polymerase catalytic domain
      pfam12174
      Location:427 → 455
      RST; RCD1-SRO-TAF4 (RST) plant domain
      cl02729
      Location:78 → 134
      WWE; WWE domain

    4. XM_015788246.3 → XP_015643732.1  uncharacterized protein LOC4340647 isoform X4

      UniProtKB/TrEMBL
      Q0DD71, Q654Q5
      Conserved Domains (2) summary
      pfam00644
      Location:215 → 393
      PARP; Poly(ADP-ribose) polymerase catalytic domain
      cl02729
      Location:78 → 134
      WWE; WWE domain

    5. XM_015788245.3 → XP_015643731.1  inactive poly [ADP-ribose] polymerase RCD1 isoform X1

      Conserved Domains (3) summary
      pfam00644
      Location:215 → 393
      PARP; Poly(ADP-ribose) polymerase catalytic domain
      pfam12174
      Location:435 → 500
      RST; RCD1-SRO-TAF4 (RST) plant domain
      cl02729
      Location:78 → 134
      WWE; WWE domain

    6. XM_015788247.3 → XP_015643733.1  uncharacterized protein LOC4340647 isoform X4

      UniProtKB/TrEMBL
      Q0DD71, Q654Q5
      Conserved Domains (2) summary
      pfam00644
      Location:215 → 393
      PARP; Poly(ADP-ribose) polymerase catalytic domain
      cl02729
      Location:78 → 134
      WWE; WWE domain

    RNA

    1. XR_010742009.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials