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    LOC4350009 F-box/FBD/LRR-repeat protein At5g22700 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350009, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4350009
    Gene description
    F-box/FBD/LRR-repeat protein At5g22700
    Locus tag
    OSNPB_110202000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4350009 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (5208596..5212039, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (5152806..5156420, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene F-box/LRR-repeat protein At3g26922-like Neighboring gene F-box/LRR-repeat protein At3g26922-like Neighboring gene F-box protein At4g09920 Neighboring gene F-box protein At4g22280

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box/FBD/LRR-repeat protein At5g22700
    Names
    F-box domain-containing protein
    Os11g0202000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      5208596..5212039 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759895.3 → XP_015615381.1  F-box/FBD/LRR-repeat protein At5g22700

      UniProtKB/TrEMBL
      A0A0P0XZX4, B7E8J9, Q0IU09, Q53LD4
      Conserved Domains (2) summary
      sd00032
      Location:175 → 194
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:17 → 56
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version

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