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    CSB DNA excision repair protein CSB-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326441, updated on 16-Jul-2024

    Summary

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    Gene symbol
    CSB
    Gene description
    DNA excision repair protein CSB-like
    Locus tag
    OSNPB_010102800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsCSB
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 6.9), flowers (RPKM 6.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (155843..160870)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (151388..156511)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable inactive shikimate kinase like 1, chloroplastic Neighboring gene uncharacterized LOC4326440 Neighboring gene uncharacterized LOC112936174 Neighboring gene light-regulated protein, chloroplastic-like Neighboring gene uncharacterized LOC107279520 Neighboring gene vacuolar protein sorting-associated protein 60.1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. DNA repair in higher plants; photoreactivation is the major DNA repair pathway in non-proliferating cells while excision repair (nucleotide excision repair and base excision repair) is active in proliferating cells. Kimura S, et al. Nucleic Acids Res, 2004. PMID 15150342, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription-coupled nucleotide-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA excision repair protein CSB
    Names
    Cockayne syndrome group B
    LOC_Os01g01312
    Os01g0102800
    P0402A09.26
    P0455C04.20
    P0672D08.47
    cockayne syndrome protein CSB
    dNA excision repair protein CSB
    protein CHROMATIN REMODELING 8
    putative DNA repair and recombination protein
    putative RAD26
    NP_001384882.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001397953.1 → NP_001384882.1  DNA excision repair protein CSB

      Status: VALIDATED

      Source sequence(s)
      AB111944, CI079747, CI085087, CI616478
      UniProtKB/Swiss-Prot
      A0A0N7KC63, Q655K6, Q7F2E4
      UniProtKB/TrEMBL
      B8ACS3, B9EYR4
      Conserved Domains (2) summary
      COG0553
      Location:292 → 882
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      PTZ00108
      Location:113 → 345
      PTZ00108; DNA topoisomerase 2-like protein; Provisional

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      155843..160870
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7F2E4.1 GenPept UniProtKB/Swiss-Prot:Q7F2E4

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