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    LOC4344674 sphingoid long-chain bases kinase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344674, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4344674
    Gene description
    sphingoid long-chain bases kinase 1
    Locus tag
    OSNPB_080152700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1349_D05.118
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 25.2), flower buds (RPKM 17.7) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (3031046..3035710)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (3017357..3022082)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4344672 Neighboring gene protein ENHANCED DISEASE RESISTANCE 2-like Neighboring gene uncharacterized LOC9266786 Neighboring gene uncharacterized LOC4344676

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipid kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sphingosine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sphingoid long-chain bases kinase 1
    Names
    Os08g0152700
    sphingosine kinase-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      3031046..3035710
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795042.3 → XP_015650528.1  sphingoid long-chain bases kinase 1

      UniProtKB/TrEMBL
      A0A0P0XC05, A2YR99, Q0J7Z5, Q84S01
      Conserved Domains (1) summary
      PLN02958
      Location:98 → 428
      PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase
    Nucleotide Protein
    Heading Accession and Version

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