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    LOC4343482 glucan endo-1,3-beta-glucosidase GII [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343482, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343482
    Gene description
    glucan endo-1,3-beta-glucosidase GII
    Locus tag
    OSNPB_070538000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0696F12.4; OJ1058_A12.142
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    Genomic context

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    See LOC4343482 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (21377805..21380020, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (21150013..21152348, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene cysteine-rich receptor-like protein kinase 6 Neighboring gene cysteine-rich receptor-like protein kinase 6 Neighboring gene cysteine-rich receptor-like protein kinase 6 Neighboring gene cysteine-rich receptor-like protein kinase 6 Neighboring gene cysteine-rich receptor-like protein kinase 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glucan endo-1,3-beta-glucosidase GII
    Names
    Os07g0538000
    putative beta-1,3-glucanase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      21377805..21380020 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791007.3 → XP_015646493.1  glucan endo-1,3-beta-glucosidase GII isoform X2

      UniProtKB/TrEMBL
      B8B6Z0, B9FXP4, Q6YVW0
      Conserved Domains (2) summary
      smart00768
      Location:462 → 545
      X8; Possibly involved in carbohydrate binding
      cl23725
      Location:29 → 365
      Glyco_hydro; Glycosyl hydrolases

    2. XM_015791006.3 → XP_015646492.1  glucan endo-1,3-beta-glucosidase GII isoform X1

      UniProtKB/TrEMBL
      B8B6Z0
      Conserved Domains (2) summary
      smart00768
      Location:463 → 546
      X8; Possibly involved in carbohydrate binding
      cl23725
      Location:30 → 366
      Glyco_hydro; Glycosyl hydrolases
    Nucleotide Protein
    Heading Accession and Version

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