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    LOC4343684 protein neprosin [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343684, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343684
    Gene description
    protein neprosin
    Locus tag
    OSNPB_070573400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1699_E05.18
    Expression
    Biased expression in flower buds (RPKM 14.3), flowers (RPKM 8.6) and 2 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (23407787..23411606)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (23178220..23182178)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4343682 Neighboring gene protein FREE1 Neighboring gene uncharacterized LOC112939660 Neighboring gene general transcription and DNA repair factor IIH subunit TFB5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein neprosin
    Names
    Os07g0573400
    putative carboxyl-terminal proteinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      23407787..23411606
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789276.3 → XP_015644762.1  protein neprosin

      UniProtKB/TrEMBL
      A0A0P0X889, A2YMW1, Q0D592, Q6ZL19
      Conserved Domains (2) summary
      pfam03080
      Location:201 → 423
      Neprosin
      pfam14365
      Location:68 → 188
      Neprosin_AP; Neprosin activation peptide
    Nucleotide Protein
    Heading Accession and Version

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