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    LOC4349949 F-box/WD-40 repeat-containing protein At3g52030 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349949, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4349949
    Gene description
    F-box/WD-40 repeat-containing protein At3g52030
    Locus tag
    OSNPB_110182400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4349949 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (4182880..4188912, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (4134352..4140515, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4349947 Neighboring gene hydroxycinnamoyltransferase 4-like Neighboring gene ankyrin repeat-containing protein At5g02620-like Neighboring gene ankyrin repeat-containing protein At5g02620

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box/WD-40 repeat-containing protein At3g52030
    Names
    F-box domain and WD40 repeat containing protein FBW2
    Os11g0182400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      4182880..4188912 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762074.3 → XP_015617560.1  F-box/WD-40 repeat-containing protein At3g52030

      UniProtKB/TrEMBL
      B8BJG2, B9G9Q7, Q0IU64, Q53MM4
      Conserved Domains (3) summary
      sd00039
      Location:167 → 200
      7WD40; WD40 repeat [structural motif]
      pfam12937
      Location:37 → 77
      F-box-like
      cl29593
      Location:168 → 369
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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