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    LOC4329643 probable L-ascorbate peroxidase 8, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329643, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4329643
    Gene description
    probable L-ascorbate peroxidase 8, chloroplastic
    Locus tag
    OSNPB_020553200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    APX8; OsAPx8; OsAPx08; P0470G10.5
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    Genomic context

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    See LOC4329643 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (21346994..21350808, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (20868300..20872075, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene MDIS1-interacting receptor like kinase 2 Neighboring gene uncharacterized LOC136355405 Neighboring gene uncharacterized LOC112937805 Neighboring gene uncharacterized LOC4329645 Neighboring gene RNA polymerase II transcriptional coactivator KIWI

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The rice thylakoid membrane-bound ascorbate peroxidase OsAPX8 functions in tolerance to bacterial blight. Jiang G, et al. Sci Rep, 2016 May 17. PMID 27185545, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in hydrogen peroxide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to reactive oxygen species IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable L-ascorbate peroxidase 8, chloroplastic
    Names
    LOC_Os02g34810
    putative thylakoid-bound ascorbate peroxidase
    thylakoid-bound ascorbate peroxidase
    NP_001388803.1
    NP_001388804.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401874.1 → NP_001388803.1  probable L-ascorbate peroxidase 8, chloroplastic isoform 1

      Status: VALIDATED

      Source sequence(s)
      AB114856, CI408052, CI581719
      UniProtKB/Swiss-Prot
      A0A0P0VKA2, Q0E0G3, Q69SV0, Q7XJ01
      UniProtKB/TrEMBL
      A0A6F8FAF7

    2. NM_001401875.1 → NP_001388804.1  probable L-ascorbate peroxidase 8, chloroplastic isoform 2

      Status: VALIDATED

      Source sequence(s)
      AB114856, CI408052, CI581719
      UniProtKB/TrEMBL
      A0A6F8FAF7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      21346994..21350808 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q69SV0.2 GenPept UniProtKB/Swiss-Prot:Q69SV0

    Gene LinkOut

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