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    LOC4350701 uncharacterized LOC4350701 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350701, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4350701
    Gene description
    uncharacterized LOC4350701
    Locus tag
    OSNPB_110549695
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4350701 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (22354064..22359009, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (20419982..20425487, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107275759 Neighboring gene phosphatidate cytidylyltransferase, mitochondrial Neighboring gene probable protein S-acyltransferase 23 Neighboring gene uncharacterized LOC9272501

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleoside triphosphate diphosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4350701
    Names
    Os11g0549695
    maf-like protein DDB_G0281937

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      22354064..22359009 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015760927.3 → XP_015616413.1  uncharacterized protein LOC4350701 isoform X1

      Conserved Domains (1) summary
      cl00276
      Location:107 → 320
      Maf_Ham1; Maf_Ham1. Maf, a nucleotide binding protein, has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea. A Ham1-related protein from Methanococcus jannaschii is a novel NTPase that has been shown to hydrolyze nonstandard ...

    2. XM_015760928.3 → XP_015616414.1  uncharacterized protein LOC4350701 isoform X2

      Conserved Domains (1) summary
      pfam02545
      Location:107 → 289
      Maf; Maf-like protein
    Nucleotide Protein
    Heading Accession and Version

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