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    LOC4337164 uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337164, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4337164
    Gene description
    uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic
    Locus tag
    OSNPB_040640500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4337164 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (33080944..33094162)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (32574392..32581682)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9270196 Neighboring gene uncharacterized LOC4337163 Neighboring gene uncharacterized LOC136356284 Neighboring gene shikimate kinase 3, chloroplastic-like Neighboring gene beta-D-xylosidase 4 Neighboring gene uncharacterized LOC4337167

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic
    Names
    Os04g0640500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      33080944..33094162
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309487.1 → XP_066165584.1  uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic

      UniProtKB/TrEMBL
      B8AV74, B9FCS6, Q01HY4, Q7XQV1

    2. XM_066309488.1 → XP_066165585.1  uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic

      UniProtKB/TrEMBL
      B8AV74, B9FCS6, Q01HY4, Q7XQV1

    3. XM_066309489.1 → XP_066165586.1  uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic

      UniProtKB/TrEMBL
      B8AV74, B9FCS6, Q01HY4, Q7XQV1

    4. XM_015780880.3 → XP_015636366.1  uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic

      UniProtKB/TrEMBL
      B8AV74, B9FCS6, Q01HY4, Q5JQY0, Q7XQV1
      Conserved Domains (1) summary
      COG0661
      Location:133 → 565
      AarF; Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family [Coenzyme transport and metabolism, Signal transduction mechanisms]
    Nucleotide Protein
    Heading Accession and Version

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