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    LOC4349516 protein NRT1/ PTR FAMILY 8.3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349516, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4349516
    Gene description
    protein NRT1/ PTR FAMILY 8.3
    Locus tag
    OSNPB_100579600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 28.4), leaves after flowering (RPKM 27.0) and 6 other tissues See more
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    Genomic context

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    See LOC4349516 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (23806838..23809877)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (23114635..23117741)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene protein WRKY1 Neighboring gene uncharacterized LOC4349515 Neighboring gene protein NRT1/ PTR FAMILY 8.3 Neighboring gene protein MAIN-LIKE 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in oligopeptide transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein NRT1/ PTR FAMILY 8.3
    Names
    Os10g0579600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      23806838..23809877
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758832.2 → XP_015614318.1  protein NRT1/ PTR FAMILY 8.3

      UniProtKB/TrEMBL
      A0A5S6R8Q7, A2ZAL9, Q0IVB9, Q7XBS8, Q9FRP3
      Conserved Domains (1) summary
      cd17351
      Location:36 → 557
      MFS_NPF; Plant NRT1/PTR family (NPF) of the Major Facilitator Superfamily of transporters
    Nucleotide Protein
    Heading Accession and Version

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