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    LOC4342182 gibberellin 2-beta-dioxygenase 5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342182, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4342182
    Gene description
    gibberellin 2-beta-dioxygenase 5-like
    Locus tag
    OSNPB_070103500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4342182 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (221379..227209)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (213546..219664)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene glutamate receptor 3.4 Neighboring gene DDRGK domain-containing protein 1-like Neighboring gene peroxidase 1-like Neighboring gene peroxidase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables gibberellin 2-beta-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in gibberellin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    gibberellin 2-beta-dioxygenase 5-like
    Names
    Os07g0103500
    P0446F04.116
    putative 1-aminocyclopropane-1-carboxylate oxidase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      221379..227209
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790057.3 → XP_015645543.1  gibberellin 2-beta-dioxygenase 5-like

      UniProtKB/Swiss-Prot
      Q8LGZ9
      UniProtKB/TrEMBL
      A2YHB5
      Conserved Domains (1) summary
      PLN02984
      Location:7 → 339
      PLN02984; oxidoreductase, 2OG-Fe(II) oxygenase family protein

    2. XM_015790056.3 → XP_015645542.1  gibberellin 2-beta-dioxygenase 5-like

      UniProtKB/Swiss-Prot
      Q8LGZ9
      UniProtKB/TrEMBL
      A2YHB5
      Conserved Domains (1) summary
      PLN02984
      Location:7 → 339
      PLN02984; oxidoreductase, 2OG-Fe(II) oxygenase family protein

    3. XM_015790060.3 → XP_015645546.1  gibberellin 2-beta-dioxygenase 5-like

      UniProtKB/Swiss-Prot
      Q8LGZ9
      UniProtKB/TrEMBL
      A2YHB5
      Conserved Domains (1) summary
      PLN02984
      Location:7 → 339
      PLN02984; oxidoreductase, 2OG-Fe(II) oxygenase family protein
    Nucleotide Protein
    Heading Accession and Version

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